Dr. Jianhua Ruan
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Dr. Jianhua Ruan


The University of Texas at San Antonio, USA

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Area of Interest:

100%
Compound Elucidation
62%
Biotechnology
90%
Regression Analysis
75%

Research Publications in Numbers

Books
5
Chapters
0
Articles
59
Abstracts
19

Selected Publications

  1. Ruan, J., Y. Deng, E.J. Perkins and W. Zhang, 2009. An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data. BMC Genomics, Vol. 10, .
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  2. Ruan, J., 2009. A fully automated method for discovering community structures in high dimensional data. Proceedings of 9th IEEE International Conference on Data Mining, December 6-9, 2009, IEEE Xplore, Miami, FL, pp: 968-973.
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  3. Ravi, D., A.M. Wiles, S. Bhavani, J. Ruan, P. Leder and A.J.R. Bishop, 2009. A network of conserved damage survival pathways revealed by a genomic RNAi screen. PLoS Genetics, Vol. 5, .
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  4. Lei, C. and J. Ruan, 2009. A novel swarm intelligence algorithm for finding DNA motifs. Int. J. Comput. Biol. Drug Des., 2: 323-339.
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  5. Dean, A.K., I. Kalajzic, S.E. Harris and J. Ruan, 2009. A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes. BMC Bioinf., Vol. 10, 10.1186/1471-2105-10-S9-S5.
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  6. Ruan, J. and W. Zhang, 2008. Identifying network communities with a high resolution. Phy. Rev., Vol. 77, .
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  7. Ray, M., J. Ruan and W. Zhang, 2008. Variations in the transcriptome of alzheimer's disease reveal modular networks involved in cardiovascular diseases. Genome Biol., Vol. 9, 10.1186/gb-2008-9-10-r148.
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  8. McDunn, J.E., K.D. Husain, A.D. Polpitiya, A. Burykin and J. Ruan et al., 2008. Plasticity of the systemic inflammatory response to acute infection during critical illness: Development of the riboleukogram.. PLoS ONE, Vol. 3, 10.1371/journal.pone.0001564.
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  9. Zhou, X., J. Ruan, G. Wang and W. Zhang, 2007. Characterization and identification of microRNA promoters in four model species. PLoS Comput. Biol., 3: 412-423.
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  10. Ruan, J. and W. Zhang, 2006. A bi-dimensional regression tree approach to the modeling of gene expression regulation. Bioinformatics, 22: 332-340.
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  11. Zhang, W., J. Ruan, T.H. Ho, Y. You, T. Yu and R.S. Quatrano, 2005. Cis-regulatory element based targeted gene finding: Genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana. Bioinformatics, 21: 3074-3081.
    PubMed  |  Direct Link  |  
  12. Ruan, J. and W. Zhang, 2005. CAGER: classification analysis of gene expression regulation using multiple information sources. BMC Bioinf., Vol. 6, .
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  13. Ruan, J.R., G.D. Stormo and W. Zhang, 2004. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. Bioinformatics, 20: 58-66.
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  14. Ruan, J., G.D. Stormo and W. Zhang, 2004. ILM: A web server for predicting RNA secondary structures with pseudoknots. Nucleic Acids Res., 32: 146-149.
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