Hi, I am Chandra Sekhar Mukhopadhyay, My LiveDNA is 91.5736
 
   
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Dr. Chandra Sekhar Mukhopadhyay
 
Highest Degree: PostDoc Fellow in Marker Assisted Selection and Functional Genomics from Iowa State University, USA
 
Institute: Guru Angad Dev Veterinary and Animal Sciences University, India
 
Area of Interest: Animal and Veterinary Sciences
  •   Bioinformatics
  •   Genomics
  •   Disease Resistance
  •   Biostatistics
 
URL: http://livedna.org/91.5736
 
My SELECTED Publications
1:   Bhardwaj, R., G.S. Brah, J.S. Arora, S. Kaur and C.S. Mukhopadhyay, 2015. Cloning and molecular characterization of toll-like receptor 4 (TLR-4) gene in Indian water buffalo. Indian J. Anim. Sci., 85: 19-24.
2:   Chabukchara, P., S. Nayyar, C.S. Mukhopadhyay and R. Jindal, 2014. Liver function profile as related to antioxidant status in summer stressed lactating buffaloes. Indian Vet. J., 91: 15-17.
3:   Dhaliwal, K.K., J.S. Arora, C.S. Mukhopadhyay and P.P. Dubey, 2015. In silico characterization of functional divergence of two cathelicidin variants in Indian sheep. Evol. Bioinf. Online, 11: 189-196.
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4:   Dubey, P.P., A. Sharma, D.S. Gour, Prashant and A. Jain et al., 2008. Leptin gene polymorphism in Indian Sahiwal cattle by Single Strand Conformation Polymorphism (SSCP). South Afr. J. Anim. Sci., 38: 131-135.
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5:   Dubey, P.P., A. Sharma, D.S. Gour, Prashant and A. Jain et al., 2013. Sequencing, single nucleotide polymorphisms identification and development of genotyping tests for leptin gene in zebu cattle (Bos indicus). Indian J. Anim. Sci., 83: 61-65.
6:   Hussain, S., C.S. Mukhopadhyay and J.S. Arora, 2014. Applications and implications of mammalian antimicrobial peptides: A review. Agric. Rev., 35: 299-306.
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7:   Iquebal, M.A., S. Jaiswal, C.S. Mukhopadhyay, C. Sarkar, A. Rai and D. Kumar, 2015. Applications of Bioinformatics in Plant and Agriculture. In: PlantOmics: The Omics of Plant Science. Barh, D., M.S. Khan and E. Davies (Ed.). Springer, India., ISBN: 978-81-322-2171-5, pp: 755-789..
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8:   Jamir, C.J., C.S. Mukhopadhyay, J.S. Arora, G.S. Brah, R. Cheema and M. Kaur, 2015. Screening of dairy breeding bulls for chromosomal profile and its andrological attributes. Indian J. Anim. Res., 49: 8-13.
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9:   Jasdeep, S., C.S. Mukhopadhyay, R.S. Sethi and J.S. Arora, 2016. Correlated expression profiling of dicer1 and tlr genes across bubaline tissues vis-A-vis in PBMCs challenged with tlr agonists. Int. J. Adv. Res., 3: 929-939.
10:   Jaswal, H., M.S. Bal, L.D. Singla, A. Sharma, P. Kaur, C.S. Mukhopadhyay and P.D. Juyal, 2014. Application of msp1β PCR and 16S rRNA semi nested PCR-RFLP for detection of persistent anaplasmosis in tick infested cattle. Int. J. Adv. Res., 2: 188-196.
11:   Joshi, I., S. Kumar, A. Kaur, C.S. Mukhopadhyay and D. Kumar, 2012. Homology modeling of buffalo (bubalus bubalis) interferon-tau protein. Am. J. Bioinf., 1: 79-86.
12:   Kaur, A., C.S. Mukhopadhyay, J.S. Arora, G.S. Brah, S. Kaur and J.C. Jamir, 2014. Detection of single nucleotide polymorphism of holandric genes and association with sperm nuclear maturity in bovines. Indian J. Dairy Sci., 67: 498-503.
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13:   Kaur, D., R.K. Agrawal, C.S. Mukhopadhyay, D. Deka and Ramneek, 2012. Phylogenetic analysis of 32kDa outer membrane protein gene (lipL32) from Leptospira interrogans serovar caniclola. Ind. Vet. J., 89: 85-88.
14:   Kaur, J., C.S. Mukhopadhyay, J.K. Dhanoa, R.S. Sethi and J.S. Arora, 2015. Expression profiling and in silico characterization of bubaline drosha in light of evolution. Int. J. Adv. Res., 3: 2956-2966.
15:   Kaur, M., R. Verma, B.K. Bansal, C.S. Mukhopadhyay and J.S. Arora, 2015. Status of sub-clinical mastitis and associated risk factors in Indian water buffalo in Doaba region of Punjab, India. Indian J. Dairy Sci., 68: 483-487.
16:   Khatun, M., S. Kaur, Kanchan and C.S. Mukhopadhyay, 2013. Subfertility problems leading to disposal of breeding bulls. Asian-Australasian J. Anim. Sci., 26: 303-308.
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17:   Kumar, G.V.P.P.S.R., G.S. Brah, H.N. Pawar, S.M. Shah and M.L. Chaudhary et al., 2011. Nucleotide sequence variability in TLR-5 gene in chicken and other species. Indian J. Poult. Sci., 46: 111-115.
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18:   Kumar, G.V.P.P.S.R., H.N. Pawar, G.S. Brah, P. Mathur and M.L. Chaudhary et al., 2010. Cloning and sequence analysis of chicken toll like receptor-7 expressed sequence tag. Indian J. Poult. Sci., 45: 115-119.
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19:   Kumar, G.V.P.P.S.R., H.N. Pawar, G.S. Brah, S.M. Shah and M.L. Chaudhary et al., 2010. Semi-quantittaive differential expression of TLR-5 and TLR-7 in chicken tissues using experion automated capillary electrophoresis system. Indian J. Poult. Sci., 45: 269-272.
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20:   Kumar, G.Y.P.P.S.R., H.N. Pawar, G.S. Brah, S.M. Shah and M.L. Chaudhary et al., 2010. Expression pattern of TLR-7 in chicken tissues by semi-quantitative peR using experion automated capillary electrophoresis system. Indian J. Poult. Sci., 45: 345-347.
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21:   Kutchy, N.A., C.S. Mukhopadhyay, G.S. Brah and J.S. Arora, 2014. Identifying molecular and spermatological markers to detect sperm chromatin fragmentation. Indian J. Anim. Sci., 84: 267-270.
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22:   Mamu, G., G.S. Brah, C.S. Mukhopadhyay, D. Deka and R. Ramneek, 2014. Molecular characterization of mannose-binding lectin protein in chickens. Indian J. Anim. Sci., 84: 34-36.
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23:   Mathew, E.N., G.S. Brah, B.S. Kumar, C.S. Mukhopadhyay and P.P. Dubey, 2014. Molecular cloning and characterization of the gene encoding heat shock protein 70 from the chicken (Gallus gallus). Proc. Natl. Acad. Sci. India Sec. B Biol. Sci., 84: 573-578.
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24:   Mukhopadhyay, C.S. and A. Verma, 2007. Prediction of fertility of frozen thawed bovine-semen using Hypo osmotic swelling test. Indian J. Anim. Prod. Manage. 23: 77-81.
25:   Mukhopadhyay, C.S. and D. Kumar, 2013. Applications of SNP-Chip in Bovine Selection. In: Advances in Cattle Research. Singh, U., S. Kumar, A. Kumar, R. Deb and A. Sharma (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789381226421, pp. 1-18..
26:   Mukhopadhyay, C.S. and S.S. Osahan, 2015. Molecular Phylogeny: Basics, Methods and Applications. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 137-156..
27:   Mukhopadhyay, C.S. and S.S. Osahan, 2015. Sequence Alignment: Concepts and Methods. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 77-112..
28:   Mukhopadhyay, C.S., 2015. Designing and In silico Quality Checking of PCR Primers. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 23-76..
29:   Mukhopadhyay, C.S., 2015. Submitting Nucleotide sequence to Bankit. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 113-136..
30:   Mukhopadhyay, C.S., A. Verma, B.K. Joshi and A. Singh, 2008. Prediction of fertility of crossbred bulls under field conditions using cryopreserved semen. Indian J. Dairy Sci., 61: 277-278.
31:   Mukhopadhyay, C.S., A. Verma, B.K. Joshi and A.K. Chakravar, 2008. Association of sperm mitochondrial activity index with gross seminal parameters and fertility in crossbred bulls. Indian J. Anim. Res., 42: 282-284.
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32:   Mukhopadhyay, C.S., A. Verma, B.K. Joshi, A. Singh and A.K. Chakravarty et al., 2008. In vitro acrosome reaction: Its pertinence in assessing fertility of cryopreserved semen. Indian J. Anim. Res., 42: 201-204.
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33:   Mukhopadhyay, C.S., A. Verma, P.P. Dubey, R. Jain and N. Singh, 2008. Sperm nuclear chromatin decondensation test: Its applicability to predict fertility of cryopreserved semen samples. Indian J. Anim. Res., 42: 285-287.
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34:   Mukhopadhyay, C.S., A.K. Gupta, B.R. Yadav and T.K. Mohanty, 2011. Exploration of Y-chromosome specific markers to discover SNP associated with sub fertility traits in dairy bulls. Indian J. Biotechnol., 10: 178-182.
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35:   Mukhopadhyay, C.S., A.K. Gupta, B.R. Yadav, I.S. Chauhan, A. Gupta, T.K. Mohanty and V.S. Rainaemail, 2011. Effect of cryopreservation on sperm chromatin integrity and fertilizing potential in bovine semen. Livest. Sci., 136: 114-121.
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36:   Mukhopadhyay, C.S., A.K. Gupta, B.R. Yadav, K. Khate, V.S. Raina, T.K. Mohanty and P.P. Dubey, 2010. Subfertility in males: An important cause of bull disposal in bovines. Asian-Australasian J. Anim. Sci., 23: 450-455.
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37:   Mukhopadhyay, C.S., J. Tokas and P.D. Mathur, 2011. Prospects and ethical concerns of embryonic stem cells research-a review. Vet. World, 4: 281-286.
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38:   Mukhopadhyay, C.S., P.P. Dubey and A.K. Gupta. 2013. Assessment of Sperm Chromatin Compactness and Integrity in Mammalian Semen Sample. In: Genetic Improvement of Livestock and Poultry. Singh, C.V. and R.S. Barwhal (Ed.). New India Publishing Agency, New Delhi, India., ISBN: 9789381450826, pp. 275-283.
39:   Mukhopadhyay, C.S., R. Kumar and G.S. Brah, 2010. Gallinacin and Fowlicidin: two promising antimicrobial peptides in chickens-a review. Vet. World, 3: 297-300.
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40:   Sangwan, V., J. Mohindroo, A. Kumar, C.S. Mukhopadhyay and N.S. Saini, 2015. Doppler ultrasonography of common carotid artery and external jugular vein in healthy and reticulo-diaphragmatic hernia affected buffaloes. Proc. Natl. Acad. Sci. India Sec. B Biol. Sci., 85: 859-865.
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41:   Sarika, M.A. Iquebal, C.S. Mukhopadhyay, P.G. Koringa, A. Rai, C.G. Joshi and D. Kumar, 2015. Genome Annotation in Prokaryotes and Eukaryotes. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 247-278..
42:   Singh, J., C.S. Mukhopadhyay, G.S. Brah and S. Saini, 2014. Z-chromosome linked dinucleotide strs: Association with reproduction traits in chicken. Indian J. Anim. Res., 48: 521-526.
43:   Singh, J., C.S. Mukhopadhyay, J.S. Arora and S. Kaur, 2015. Biocomputational characterization and evolutionary analysis of bubaline dicer1 enzyme. Asian-Aust. J. Anim. Sci., 28: 876-887.
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44:   Singh, U. and S. Kumar, 2015. Bioinformatic Approaches for Livestock Genome Analysis., Satish Serial Publishing House, India, ISBN : 9789384053017, Pages: 314.
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45:   Swati, G.V.P.P.S.R. Kumar, C.S. Mukhopadhyay, G.S. Brah and M. Ansal et al., 2012. In silico analysis of evolutionary divergence of TLR9 transcript in Indian major carp Catla catla. Her. J. Biochem. Bioinf., 1: 8-13.
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46:   Swati, G.V.R. Kumar, G.S. Brah, D. Deka, R.K. Agrawal, M.D. Ansal and C.S. Mukhopadhyay, 2013. Differential expression profiling of toll like receptors 3, 4 and 9 genes in major tissues of Indian major carp Catla catla. Indian J. Anim. Sci., 83: 983-986.
47:   Tokas, J., C.S. Mukhopadhyay and A. Verma, 2011. Self renewal of spermatogonial stem cells: the most promising multipotent cells - a review. Vet. World, 4: 234-240.
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48:   Verma, G., J.S. Arora, R.S. Sethi, C.S. Mukhopadhyay and R. Verma, 2015. Handmade cloning: recent advances, potential and pitfalls. J. Anim. Sci. Biotechnol., Vol. 6. .
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