1. Tambunan, U.S.F., W. Chua, A.A. Parikesit and D. Kerami, 2016. Designing disulfide cyclic peptide as fusion inhibitor that targets denv envelope protein. Jurnal Teknologi, 78: 95-103.
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2. Tambunan, U.S.F., F.R.P. Sipahutar, A.A. Parikesit and D. Kerami, 2016. Vaccine design for H5N1 based on B-and T-cell epitope predictions. Bioinf. Biol. Insights, 10: 27-35.
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3. Tambunan, U.S.F., R.A. Rachmania and A.A. Parikesit, 2015. In silico modification of oseltamivir as neuraminidase inhibitor of influenza A virus subtype H1N1. J. Biomed. Res., 29: 150-159.
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4. Tambunan, U.S.F., A.A. Parikesit, Y.C. Unadi and D. Kerami, 2015. Designing cyclopentapeptide inhibitor of neuraminidase H5N1 virus through molecular and pharmacology simulations. Tsinghua Sci. Technol., 20: 431-440.
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5. Tambunan, U.S., H. Zahroh, A.A. Parikesit, S. Idrus and D. Kerami, 2015. Screening Analogs of β-OG pocket binder as fusion inhibitor of dengue virus 2. Drug Target Insights, 9: 33-49.
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6. Tambunan, U.S., A.A. Parikesit, A.S. Ghifari and C.P. Satriyanto, 2015. In silico identification of 2-oxo-1, 3-thiazolidine derivatives as novel inhibitor candidate of class II histone deacetylase (HDAC) in cervical cancer treatment. Arabian J. Chem., 10.1016/j.arabjc.2015.07.010.
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7. Tambunan, U.S.F., H. Zahroh, B.B. Utomo and A.A. Parikesit, 2014. Screening of commercial cyclic peptide as inhibitor NS5 methyltransferase of dengue virus through molecular docking and molecular dynamics simulation. Bioinformation, 10: 23-27.
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8. Tambunan, U.S.F., A.A. Parikesit and F.R.P. Sipahutar, 2014. Computational design of drug candidates for influenza a virus subtype H1N1 by inhibiting the viral neuraminidase-1 enzyme. Acta Pharm., 64: 157-172.
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9. Tambunan, U.S.F., A. Randy and A.A. Parikesit, 2014. Design of Candida antarctica lipase B thermostability improvement by introducing extra disulfide bond into the enzyme. Online J. Biol. Sci., 14: 108-118.
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10. Parikesit, A.A., L. Steiner, P.F. Stadler and S.J. Prohaska, 2014. Pitfalls of ascertainment biases in genome Annotations-computing comparable protein domain distributions in Eukarya. Malaysian J. Fundam. Applied Sci., 10: 65-75.
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11. Bakri, R., A.A. Parikesit, C.P. Satriyanto, D. Kerami and U.S.F. Tambunan, 2014. Utilization of boron compounds for the modification of suberoyl anilide hydroxamic acid as inhibitor of histone deacetylase class II Homo sapiens. Adv. Bioinf., 10.1155/2014/104823.
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12. Tambunan, U.S.F., R. Bakri, T. Prasetia, A.A. Parikesit and D. Kerami, 2013. Molecular dynamics simulation of complex histones deacetylase (HDAC) class II homo sapiens with suberoylanilide hydroxamic acid (SAHA) and its derivatives as inhibitors of cervical cancer. Bioinf., 9: 696-700.
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13. Tambunan, U.S.F., M.R. Rahdiansyah and A.A. Parikesit, 2013. In silico design of the M2 proton channel inhibitors of H1N1 virus. OnLine J. Biol. Sci., 13: 1-12.
14. Tambunan, U.S.F., I. Kurniawan and A.A. Parikesit, 2013. Molecular dynamic simulation of complex NS2B-NS3 DENV2 protease with potential inhibitors of cyclic tripeptide. Afr. J. Biotechnol., 12: 4419-4431.
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15. Tambunan, U.S.F., H. Pratomo and A.A. Parikesit, 2013. Modification of kampmann A5 as potential fusion inhibitor of dengue virus using molecular docking and molecular dynamics approach. J. Med. Sci., 13: 621-634.
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16. Tambunan, U.S.F., A.A. Parikesit, T. Prasetia and D. Kerami, 2013. In silico molecular interaction studies of suberoylanilide hydroxamic acid and its modified compounds with histones deacetylase class II Homo sapiens as curative measure towards cervical cancer. Eng., 5: 203-206.
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17. Tambunan, U.S.F. and A.A. Parikesit, 2013. In Silico Approach Towards H5N1 Virus Protein and Transcriptomics - Based Medication. Afr. J. Biotechnol., 12: 3110-3114.
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18. Parikesit, A.A., Kinanty and U.S.F. Tambunan, 2013. Screening of commercial cyclic peptides as inhibitor envelope protein dengue virus (DENV) through molecular docking and molecular dynamics. Pak. J. Biol. Sci., 16: 1836-1848.
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19. Tambunan, U.S.F., R. Harganingtyas and A.A. Parikesit, 2012. In silico modification of (1R, 2R, 3R, 5S)-(-)- isopinocampheylamine as inhibitors of m2 proton channel in Influenza A virus subtype H1N1, using the molecular docking approach. Trends Bioinfo., 5: 25-46.
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20. Tambunan, U.S.F., N. Amri and A.A. Parikesit, 2012. In silico design of cyclic peptides as influenza virus, a subtype H1N1 neuraminidase inhibitor. Afr. J. Biotechnol., 11: 11474-11491.
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21. Tambunan, U.S.F., D. Febrianto and A.A. Parikesit, 2012. In silico genetic variation pathogenicity analysis of hemagglutinin, matrix 1 and non structural 1 protein of human H5N1 Indonesian strain. IIOABJ., 3: 5-14.
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22. Tambunan, U.S.F. and A.A. Parikesit, 2012. HPV Bioinformatics: In silico Detection, Drug Design and Prevention Agent Development. In: Topics on Cervical Cancer with an Advocacy for Prevention, Rajkumar, R. (Ed.)., InTech Publisher, China.
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23. Tambunan, U.S.F., R.S. Noors, A.A. Parikesit, Elyana and W. Ronggo, 2011. Molecular dynamics simulation of DENV RNA-dependent RNA-polymerase with potential inhibitor of disulfide cyclic peptide. J. Biol. Sci., 11: 48-62.
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24. Tambunan, U.S.F., N. Apriyanti, A.A. Parikesit, W. Chua and K. Wuryani, 2011. Computational design of disulfide cyclic peptide as potential inhibitor of complex NS2B-NS3 dengue virus protease. Afr. J. Biotechnol., 10: 12281-12290.
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25. Tambunan, U.S.F., N Bramantya and A.A. Parikesit, 2011. In silico modification of suberoylanilide hydroxamic acid (SAHA) as potential inhibitor for class II histone deacetylase (HDAC). BMC Bioinformatics, Vol. 12, 10.1186/1471-2105-12-S13-S23.
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26. Tambunan, U.S.F. and A.A. Parikesit, 2011. In silico design of drugs and vaccines for dengue disease. Trends Bioinform., 4: 1-9.
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27. Parikesit, A.A., P.F. Stadler and S.J. Prohaska, 2011. Evolution of domain co-occurrences: Some striking results. Proceedings of the German Conference on Bioinformatics, September 7-9, 2011, Weihenstephan, pp: 1-3.
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28. Parikesit, A.A., P.F. Stadler and S.J. Prohaska, 2011. Evolution and quantitative comparison of genome-wide protein domain distributions. MDPI Genes, 2: 912-924.
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29. Tambunan, U.S.F., S. Sugito and A.A. Parikesit, 2010. Design and evaluation of three pair primers for exon 1 amplification of hyaluroglucosaminidase-1 gene. OnLine J. Biol. Sci., 10: 66-72.
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30. Tambunan, U.S.F., Fadilah and A.A. Parikesit, 2010. Bioactive compounds screening from zingiberaceae family as influenza a/swine flu virus neuraminidase inhibitor through docking approach. Online J. Biol. Sci., 10: 151-156.
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31. Tambunan, U.S.F., A. Limanto and A.A. Parikesit, 2010. In silico analysis of hemagglutinin, neuraminidase and matrix2 of H5N1 virus indonesian strain related to its high pathogenicity. IIOAB J., 1: 17-24.
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32. Tambunan, U.S.F. and A.A. Parikesit, 2010. Cracking the genetic code of human virus by using open source bioinformatics tools. J. Fund. Sci., 6: 42-50.
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33. Parikesit, A.A., S. Prohaska and P. Stadler, 2010. Protein domain co-occurrences reveal functional changes of regulatory mechanisms during evolution. New Biotechnol., 27: S44-S45.
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34. Parikesit, A.A., P.F. Stadler and S.J. Prohaska, 2010. Detection of protein domains in eukaryotic genome sequences. Proceedings of the 5th Brazilian Symposium on Bioinformatics, Volume 6268, August 31-September 3, 2010, Springer Berlin Heidelberg, pp: 71-74.
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35. Parikesit, A.A., 2010. The role of bioinformatics in protein-protein interaction study. Sigma J. Sci. Technol., 13: 1-17.
36. Tambunan, U.S.F., A.A. Parikesit, Hendra, R.I. Taufik, F. Amelia and Syamsudin, 2009. In silico analysis of envelope dengue virus-2 and envelope dengue virus-3 protein as the backbone of dengue virus tetravalent vaccine by using homology modeling method. OnLine J. Biol. Sci., 9: 6-16.
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37. Tambunan, U.S.F., D. Sugiono, T.A. Tochary and A.A. Parikesit, 2007. Computational study of post translation modification in chimeric virus like particles vaccine of human papilloma virus with virion capsil L1. Makara J. Sci., 11: 56-62.
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