1. Kurt, F. and E. Filiz, 2018. Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: Insights into iron (Fe) homeostasis. Biometals, 31: 48-504.
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2. Kaya, E., R. Vatansever and E. Filiz, 2018. Assessment of the genetic relationship of Turkish olives (Olea europaea subsp. europaea) cultivars based on cpDNA trnL-F regions. Acta Bot. Croatica, 77: 88-92.
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3. Filiz, E. and R. Vatansever, 2018. Genome-wide identification of mildew resistance locus O (MLO) genes in tree model poplar (Populus trichocarpa): Powdery mildew management in woody plants. Eur. J. Plant Pathol., 152: 95-109.
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4. Akbudak, M.A., E. Filiz, R. Vatansever and K. Kontbay, 2018. Genome-wide identification and expression profiling of ascorbate peroxidase (APX) and glutathione peroxidase (GPX) genes under drought stress in sorghum (Sorghum bicolor L.). J. Plant Growth Regul., 37: 925-936.
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5. Akbudak, M.A., E. Filiz and K. Kontbay, 2018. Genome-wide identification and cadmium induced expression profiling of sulfate transporter (SULTR) genes in sorghum (Sorghum bicolor L.). Biometals, 31: 91-105.
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6. Akbudak, M.A. and E. Filiz, 2018. Genome-wide analyses of ATP sulfurylase (ATPS) genes in higher plants and expression profiles in sorghum (Sorghum bicolor) under cadmium and salinity stresses. Genomics. 10.1016/j.ygeno.2018.03.013.
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7. Vatansever, R., I.I. Ozyigit, E. Filiz and N. Gozukara, 2017. Genome-wide exploration of silicon (Si) transporter genes, Lsi1 and Lsi2 in plants; insights into Si-accumulation status/capacity of plants. BioMetals, 30: 185-200.
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8. Vatansever, R., E. Filiz and S. Eroglu, 2017. Genome-wide exploration of metal tolerance protein (MTP) genes in common wheat (Triticum aestivum): Insights into metal homeostasis and biofortification. Biometals, 30: 217-235.
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9. Ozyigit, I.I., R. Vatansever and E. Filiz, 2017. Comparative analyses of pathogenesis-related protein-10 (PR10) in plants. Indian J. Biotechnol., 16: 325-333.
10. Filiz, E., R. Vatansever, I.I. Ozyigit, M.E. Uras, U. Sen, N.A. Anjum and E. Pereira, 2017. Genome-wide identification and expression profiling of EIL gene family in woody plant representative poplar (Populus trichocarpa). Arch. Biochem. Biophys., 627: 30-45.
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11. Filiz, E., R. Vatansever and I.I. Ozyigit, 2017. Insights into a key sulfite scavenger enzyme sulfite oxidase (SOX) gene in plants. Physiol. Mol. Biol. Plants, 2: 385-395.
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12. Filiz, E., R. Vatansever and I.I. Ozyigit, 2017. Bioinformatics Database Resources for Plant Transcription Factors. In: Plant Bioinformatics, Hakeem, K., A. Malik, F. Vardar-Sukan and M. Ozturk (Eds.). Springer, Cham, ISBN: 978-3-319-67155-0, pp: 161-177.
13. Filiz, E., R. Vatansever and I.I. Ozyigit, 2017. Dissecting a co-expression network of basic helix-loop- helix (bHLH) genes from phosphate (Pi)-starved soybean (Glycine max). Plant Gene., 9: 19-25.
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14. Vatansever, R., M. E. Uras , U. Sen, I.I. Ozyigit and E. Filiz, 2016. Isolation of a transcription factor DREB1A gene from Phaseolus vulgaris and computational insights into its characterization: protein modeling, docking and mutagenesis. J. Biomol. Struct. Dyn., 9: 1-12.
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15. Vatansever, R., I.I. Ozyigit, E. Filiz, 2016. Genome-wide identification and comparative analysis of copper transporter genes in plants. Interdiscip. Sci. Comput. Life Sci., 1: 1-14.
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16. Vatansever, R., I.I. Ozyigit and E. Filiz, 2016. Essential and beneficial trace elements in plants, and their transport in roots: a review Appl. Biochem. Biotechnol., 9: 1-19.
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17. Vatansever, R., I. Koc, I.I. Ozyigit, U. Sen and M. E. Uras, et al., 2016. Genome-wide identification and expression analysis of sulfate transporter (SULTR) genes in potato (Solanum tuberosum L.). Planta., 244: 1167-1183.
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18. Vatansever, R., E. Filiz and I. I. Ozyigit, 2016. In silico analysis of Mn transporters (NRAMP1) in various plant species. Mol. Biol. Rep., 43: 151-163.
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19. Tombuloglu, H., E. Filiz, M. Aydın, and I. Koc, 2016. Genome-wide identification and expression analysis of sulphate transporter (SULTR) genes under sulfur deficiency in Brachypodium distachyon. J. Plant Biochem. Biotechnol., 10: 1-11.
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20. Tombuloglu, H., A. ABLAZOV, E. Filiz, 2016. Genome-wide analysis of response to low sulfur (LSU) genes in grass species and expression profiling of model grass species Brachypodium distachyon under S deficiency. Turk. J. Biol., 40: 934-943.
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21. Ozyigit, I.I., I. Dogan, S. Igdelioglu, E. Filiz and S. Karadeniz et al ., 2016. Screening of damage induced by lead (Pb) in rye (Secale cereale L.) - a genetic and physiological approach. Biotechnol. Biotechnol. Equip., 30: 489-496.
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22. Ozyigit, I.I., E. Filiz, R. Vatansever, K.Y. Kurtoglu and I. Koc et al ., 2016. Identification and comparative analysis of h2o2-scavenging enzymes (ascorbate peroxidase and glutathione peroxidase) in selected plants employing bioinformatics approaches Front. Plant Sci., 7: 137-158.
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23. Kulac, S., E. Filiz, E. Cicek, Z. Degermenci, and R. Vatansever, 2016. Assessment of genetic diversity in natural European hophornbeam (Ostrya carpinifolia Scop.) populations in Turkey. Biotechnol. Biotechnol. Equip., 30: 948-955.
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24. Filiz, E., R. Vatansever, I.I. Ozyigit, 2016. Molecular docking of Glycine max and Medicago truncatula ureases with urea; bioinformatics approaches. Mol. Biol. Rep., 43: 129-140.
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25. Filiz, E., I. I. Ozyigit, and R. Vatansever, 2016. Comparative analyses of squalene synthase (SQS) proteins in poplar and pine by using bioinformatics tools. Tree Genet. Genomes., 12: 1-11.
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26. Filiz, E and K. Ibrahim, 2016. Genome-wide identification and comparative analysis of EPSPS (aroA) genes in different plant species. J. Plant Biochem. Biotechnol., 25: 21-29.
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27. Vatansever, R., I.I. Ozyigit, E. Filiz, 2015. Comparative and phylogenetic analysis of zinc (Zn) transporter genes/proteins in plants. Turk. J. Biol., 10.3906/biy-1501-91.
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28. Vatansever, R., E. Filiz, I.I. Ozyigit, 2015. In silico identification and comparative analysis of molybdenum (Mo) transporter genes in plants. Braz. J. Bot., 39: 87-99.
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29. Vatansever, R., E. Filiz, I.I. Ozyigit, 2015. Genome-wide Analysis of Iron-Regulated Transporter 1 (IRT1) Genes in Plants. Genes in Plants, 56: 516-523.
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30. Tombuloglu, H., M. Aydin, E. Filiz, 2015. Comparative analysis of embryo surrounding region (Esr- 6) genes in Turkish maize varieties: sequencing and modeli. Braz. J. Bot., 39: 287-293.
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31. Ozyigit, I.I., D. Ilhan and F. Ertugrul, 2015. In silico analysis of simple sequence repeats (SSRs) in chloroplast genomes of Glycine species. Plant Omics, 8: 24-29.
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32. Koc, I., Z.O. Caliskaner, E. Filiz, 2015. Application of data analysis in cold stress: A case study of Nicotiana benthamiana. Turk. J. Bot., 39: 1021-1032.
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33. Koc, I., V. Recep, I.O. Ibrahim and F. Ertugrul, 2015. Identification of differentially expressed genes in chilling-induced potato (Solanum tuberosum L.): A data analysis study. Appl. Biochem. Biotechnol., 177: 792-811.
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34. Koc, I., F. Ertugrul and T. Huseyin, 2015. Comparative analysis of plant lycopene cyclases. Comput. Biol. Chem., 58: 81-92.
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35. Ibrahim, K.O.C., F. Ertugrul and T. Huseyin, 2015. Assessment of miRNA expression profile and differential expression pattern of target genes in cold-tolerant and cold-sensitive tomato cultivars. Biotechnol. Biotechnol. Equip., 29: 851-860.
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36. Filiz, E., I.O. Ibrahim and V. Recep, 2015. Genome-wide identification of galactinol synthase (GolS) genes in Solanum lycopersicum and Brachypodium distachyon. Comput. Biol. Chem., 58: 149-157.
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37. Filiz, E., I. Dogan, I.I. Ozyigit, 2015. Analysis of EST-SSRs in silver birch (Betula pendulaRoth.) J. For. Res., 11: 639-646.
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38. Filiz, E., D. Assaf, F. Tzion, K.M. Ozge, N. Eviatar, W. Song and A. Ahu, 2015. Barley molybdenum cofactor sulfurase (MCSU): Sequencing, modeling, and its comparison to other higher plants. Turk. J. Agric. For., 39: 786-796.
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39. Filiz, E., B. Seda, I.O. Ibrahim, K. Semsettin and C.S.O. Fatma, 2015. Assessment of genetic variations of silver lime (Tilia tomentosa Moench.) by RAPD markers in urban and forest ecosystems. Biotechnol. Biotechnol. Equip., 29: 631-636.
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40. Filiz, E., O. Etem, K. Ali, T. Huseyin, T. Guzin, B. Seda and A. Mehtap, 2014. Assessment of genetic diversity and phylogenetic relationships of endangered endemic plant Barbarea integrifolia DC. (Brassicaceae) in Turkey. Turk. J. Bot., 38: 1169-1181.
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41. Filiz, E., K. Ibrahim and T. Huseyin, 2014. Genome-wide identification and analysis of growth regulating factor genes in Brachypodium distachyon: In silico approaches. Turk. J. Biol., 38: 296-306.
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42. Filiz, E., K. Ibrahim and I.O. Ibrahim, 2014. Comparative analysis and modeling of superoxide dismutases (SODs) in brachypodium distachyon L.. Appl. Biochem. Biotechnol., 173: 1183-1196.
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43. Filiz, E., H. Tombuloglu, I. Koc and E. Osma, 2014. Characterization of wound-induced serine protease inhibitor (wip1) genes and proteins in turkish maize varieties. Biochem., 79: 836-844.
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44. Filiz, E and T. Huseyin, 2014. In silico analysis of DREB transcription factor genes and proteins in grasses. Appl. Biochem. Biotechnol., 174: 1272-1285.
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45. Filiz, E and T. Huseyin, 2014. Genome-wide distribution of superoxide dismutase (SOD) gene families in Sorghum bicolor. Turk. J. Biol., 39: 49-59.
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46. Filiz, E and K. Ibrahim, 2014. Assessment of chloroplast microsatellite from pine family (Pinaceae) by using bioinformatics tools. Indian J. Biotechnol., 13: 33-40.
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47. Filiz, E., T. Huseyin and I.O. Ibrahim, 2013. Genome wide analysis of IQ67 domain (IQD) gene families in Brachypodium distachyon. Plant Omics J., 6: 425-432.
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48. Filiz, E., I.O. Ibrahim, T. Huseyin and K. Ibrahim, 2013. In silico comparative analysis of LEA (Late Embryogenesis Abundant) proteins in Brachypodium distachyon L.. Plant Omics, 6: 433-440.
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49. Filiz, E., 2013. SSRs mining of brassica species in mitochondrial genomes: Bioinformatic approaches. Hortic. Environ. Biotechnol., 54: 548-553.
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50. Filiz, E., B.S. Ozdemir, M. Tuna and H. Budak, 2009. Diploid Brachypodium distachyon of Turkey: Molecular and Morphologic Analysis. In: Molecular Breeding of Forage and Turf. Yamada, T. and G. Spangenberg (Eds.). Springer New York., ISBN: 978-0-387-79143-2, New York, pp 83-90.
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51. Filiz, E., B.S. Ozdemir, F. Budak, J.P. Vogel, M. Tuna and H. Budak, 2009. Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines. Genome, 52: 876-890.
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52. Ozdemir, B.S., H. Pilar, F. Ertugrul and B. Hikmet, 2008. Brachypodium Genomics. Int. J. Plant Genomics, 10.1155/2008/536104.
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