Dr. Dipankar Chatterji

Professor
Indian Institute of Science, India

Highest Degree
Ph.D. in Molecular Biology from Indian Institute of Science, India

My URL
https://livedna.org/91.23951

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Area of Interest:

Molecular Sciences
Transcriptional Regulation
Protein Interaction
Nucleus
Mycobacteriology

Selected Publications

  1. Williams, S.M., A.V. Chandran, S. Prakash, M. Vijayan and D. Chatterji, 2017. A Mutation directs the structural switch of DNA binding proteins under starvation to a ferritin-like protein cage. Structure, 25: 1449-1454.
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  2. Williams, S.M. and D. Chatterji, 2017. Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis. Metallomics, 9: 685-698.
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  3. Syal, K., N. Bhardwaj and D. Chatterji, 2017. Vitamin C targets (p) ppGpp synthesis leading to stalling of long-term survival and biofilm formation in Mycobacterium smegmatis. FEMS Microbiol. Lett., Vol. 364. 10.1093/femsle/fnw282.
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  4. Syal, K., K. Flentie, N. Bhardwaj, K. Maiti, N. Jayaraman, C.L. Stallings and D. Chatterji, 2017. Synthetic (p) ppGpp analogue is an inhibitor of stringent response in mycobacteria. Antimicrobial Agents Chemotherapy, Vol. 61. 10.1128/AAC.00443-17.
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  5. Petchiappan, A. and D. Chatterji, 2017. Pup recycling regulates the proteasome. FEBS J., 284: 1787-1789.
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  6. Petchiappan, A. and D. Chatterji, 2017. Antibiotic resistance: Current perspectives. ACS Omega, 2: 7400-7409.
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  7. Jayaraman, N., K. Maiti, K. Syal and D. Chatterji, 2017. Synthetic arabinomannan heptasaccharide glycolipids inhibit biofilm growth and supplements isoniazid effects in Mycobacterium smegmatis. Chembiochem, 18: 1959-1970.
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  8. Ghosh, S. and D. Chatterji, 2017. Two zinc finger proteins from Mycobacterium smegmatis: DNA binding and activation of transcription. Genes Cells, 22: 699-714.
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  9. Bhowmik, D., N. Bhardwaj and D. Chatterji, 2017. Influence of flexible ω on the activity of E. coli RNA polymerase: A thermodynamic analysis. Biophys. J., 112: 901-910.
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  10. Syal, K., K. Maiti, K. Naresh, P.G. Avaji, D. Chatterji and N. Jayaraman, 2016. Synthetic arabinomannan glycolipids impede mycobacterial growth, sliding motility and biofilm structure. Glycoconjugate J., 33: 763-777.
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  11. Krishnan, S., A. Petchiappan, A. Singh, A. Bhatt and D. Chatterji, 2016. R‐loop induced stress response by second (p) ppGpp synthetase in Mycobacterium smegmatis: Functional and domain interdependence. Mol. Microbiol., 102: 168-182.
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  12. Krishnamurthy, S., S. Ghosh, D. Chatterji, R. Ganapathy and A.K. Sood, 2016. A micrometre-sized heat engine operating between bacterial reservoirs. Nat. Phys., 12: 1134-1138.
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  13. Gupta, K.R., P. Baloni, S.S. Indi and D. Chatterji, 2016. Regulation of growth, cell shape, cell division and gene expression by second messengers (p) ppGpp and cyclic Di-GMP in Mycobacterium smegmatis. J. Bacteriol., 198: 1414-1422.
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  14. Syal, K., K. Maiti, K. Naresh, D. Chatterji and N. Jayaraman, 2015. Synthetic glycolipids and (p) ppGpp analogs: development of inhibitors for mycobacterial growth, biofilm and stringent response. Adv. Exp. Med. Biol., 842: 309-327.
    CrossRef  |  PubMed  |  

  15. Syal, K., H. Joshi, D. Chatterji and V. Jain, 2015. Novel pppGpp binding site at the C‐terminal region of the Rel enzyme from Mycobacterium smegmatis. FEBS J., 282: 3773-3785.
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  16. Syal, K. and D. Chatterji, 2015. Differential binding of ppGpp and pppGpp to E. coli RNA polymerase: Photo‐labeling and mass spectral studies. Genes Cells, 20: 1006-1016.
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  17. Kurthkoti, K., P. Tare, R. Paitchowdhury, V.N. Gowthami and M.J. Garcia et al., 2015. The mycobacterial iron‐dependent regulator IdeR induces ferritin (bfrB) by alleviating Lsr2 repression. Mol. Microbiol., 98: 864-877.
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  18. Gupta, K.R., S. Kasetty and D. Chatterji, 2015. Novel functions of (p) ppGpp and cyclic di-GMP in mycobacterial physiology revealed by phenotype microarray analysis of wild-type and isogenic strains of Mycobacterium smegmatis. Applied Environ. Microbiol., 81: 2571-2578.
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  19. Vogel, S., M. Chatterjee, K. Metzger, O. Borst and T. Geisler et al., 2014. Activated platelets interfere with recruitment of mesenchymal stem cells to apoptotic cardiac cells via high mobility group box 1/Toll-like receptor 4-mediated down-regulation of hepatocyte growth factor receptor MET. J. Biol. Chem., 289: 11068-11082.
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  20. Verma, A.K. and D. Chatterji, 2014. Dual role of MsRbpA: Transcription activation and rescue of transcription from the inhibitory effect of rifampicin. Microbiology, 160: 2018-2029.
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  21. Sharma, I.M., S. Prakash, T. Dhanaraman and D. Chatterji, 2014. Characterization of a dual-active enzyme, DcpA, involved in cyclic diguanosine monophosphate turnover in Mycobacterium smegmatis. Microbiology, 160: 2304-2318.
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  22. Sharma, I.M., A. Petchiappan and D. Chatterji, 2014. Quorum sensing and biofilm formation in mycobacteria: Role of c‐di‐GMP and methods to study this second messenger. IUBMB Life, 66: 823-834.
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  23. Sarkar, P., A.A. Sardesai, K.S. Murakami and D. Chatterji, 2013. Inactivation of the bacterial RNA polymerase due to acquisition of secondary structure by the ω subunit. J. Biol. Chem., 288: 25076-25087.
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  24. Bharati, B.K., R.K. Swetha and D. Chatterji, 2013. Identification and characterization of starvation induced msdgc-1 promoter involved in the c-di-GMP turnover. Gene, 528: 99-108.
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  25. Bharati, B.K., K. Naresh, D. Chatterji and N. Jayaraman, 2013. Synthetic arabinan, arabinomannan glycolipids and their effects on mycobacterial growth, sliding motility and biofilm formation. Carbohydrate Chem., 39: 58-77.

  26. Bharati, B.K. and D. Chatterji, 2013. Quorum sensing and pathogenesis: role of small signalling molecules in bacterial persistence. Curr. Sci., 105: 643-656.

  27. Vats, A., A.K. Singh, R. Mukherjee, T. Chopra and M.S. Ravindran et al., 2012. Retrobiosynthetic approach delineates the biosynthetic pathway and the structure of the acyl chain of mycobacterial glycopeptidolipids. J. Biol. Chem., 287: 30677-30687.
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  28. Sharma, I.M., T. Dhanaraman, R. Mathew and D. Chatterji, 2012. Synthesis and characterization of a fluorescent analogue of cyclic di-GMP. Biochemistry, 51: 5443-5453.
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  29. Murdeshwar, M.S. and D. Chatterji, 2012. MS_RHII-RSD, a dual-function RNase HII-(p) ppGpp synthetase from Mycobacterium smegmatis. J. Bacteriol., 194: 4003-4014.
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  30. Mukherjee, R. and D. Chatterji, 2012. Glycopeptidolipids: Immuno‐modulators in greasy mycobacterial cell envelope. IUBMB Life, 64: 215-225.
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  31. Ganguly, A. and D. Chatterji, 2012. A comparative kinetic and thermodynamic perspective of the σ-competition model in Escherichia coli. Biophys. J., 103: 1325-1333.
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  32. Dey, A., V.R. Adithi and D. Chatterji, 2012. Co-evolution of RNA polymerase with RbpA in the phylum Actinobacteria. Applied Trans. Genomics, 1: 9-20.
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  33. Dey, A. and D. Chatterji, 2012. Tracing the variation in physiological response to rifampicin across the microbial spectrum. J. Bacteriol. Virol., 42: 87-100.
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  34. Bharati, B.K., I.M. Sharma, S. Kasetty, M. Kumar, R. Mukherjee and D. Chatterji, 2012. A full-length bifunctional protein involved in c-di-GMP turnover is required for long-term survival under nutrient starvation in Mycobacterium smegmatis. Microbiology, 158: 1415-1427.
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  35. Naresh, K., B.K. Bharati, P.G. Avaji, D. Chatterji and N. Jayaraman, 2011. Synthesis, biological studies of linear and branched arabinofuranoside-containing glycolipids and their interaction with surfactant protein A. Glycobiology, 21: 1237-1254.
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  36. Ghatak, P., K. Karmakar, S. Kasetty and D. Chatterji, 2011. Unveiling the role of Dps in the organization of mycobacterial nucleoid. PLoS One, Vol. 6. 10.1371/journal.pone.0016019.
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  37. Ganguly, A., P. Rajdev, S.M. Williams and D. Chatterji, 2011. Nonspecific interaction between DNA and protein allows for cooperativity: A case study with mycobacterium DNA binding protein. J. Phys. Chem. B, 116: 621-632.
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  38. Ganguly, A. and D. Chatterji, 2011. Sequential assembly of an active RNA polymerase molecule at the air-water interface. Langmuir, 27: 3808-3814.
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  39. Dey, A., A.K. Verma and D. Chatterji, 2011. Molecular insights into the mechanism of phenotypic tolerance to rifampicin conferred on mycobacterial RNA polymerase by MsRbpA. Microbiology, 157: 2056-2071.
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  40. Sharma, U.K. and D. Chatterji, 2010. Transcriptional switching in Escherichia coli during stress and starvation by modulation of σ70 activity. FEMS Microbiol. Rev., 34: 646-657.
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  41. Sabareesh, V., P. Sarkar, A.A. Sardesai and D. Chatterji, 2010. Identifying N6OD mutation in omega subunit of E. coli RNA polymerase by bottom-up proteomic approach. Analyst, 133: 2723-2729.

  42. Naresh, K., B.K. Bharati, P.G. Avaji, N. Jayaraman and D. Chatterji, 2010. Synthetic arabinomannan glycolipids and their effects on growth and motility of the Mycobacterium smegmatis. Organic Biomolecular Chem., 8: 592-599.
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  43. Mathew, R., A.K. Kruthiventi, J.V. Prasad, S.P. Kumar, G. Srinu and D. Chatterji, 2010. Inhibition of mycobacterial growth by plumbagin derivatives. Chem. Biol. Drug Design, 76: 34-42.
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  44. Gupta, K., P. Kumar and D. Chatterji, 2010. Identification, activity and disulfide connectivity of C-di-GMP regulating proteins in Mycobacterium tuberculosis. PLoS One, Vol. 5. 10.1371/journal.pone.0015072.
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  45. Dey, A., A.K. Verma and D. Chatterji, 2010. Role of an RNA polymerase interacting protein, MsRbpA, from Mycobacterium smegmatis in phenotypic tolerance to rifampicin. Microbiology, 156: 873-883.
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  46. Chowdhury, R.P., R. Saraswathi and D. Chatterji, 2010. Mycobacterial stress regulation: The Dps "twin sister" defense mechanism and structure‐function relationship. IUBMB Life, 62: 67-77.
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  47. Saraswathi, R., R.P. Chowdhury, S.M. Williams, P. Ghatak and D. Chatterji, 2009. The mycobacterial MsDps2 protein is a nucleoid-forming DNA binding protein regulated by sigma factors σA and σB. PLoS One, Vol. 4. 10.1371/journal.pone.0008017.
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  48. Ganguly, A., P. Rajdev and D. Chatterji, 2009. Sequence specific interaction between promoter DNA and Escherichia coli RNA polymerase: Comparative thermodynamic analysis with one immobilized partner. J. Phys. Chem. B, 113: 15399-15408.
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  49. Sharma, U.K. and D. Chatterji, 2008. Differential mechanisms of binding of anti-sigma factors Escherichia coli Rsd and bacteriophage T4 AsiA to E. coli RNA polymerase lead to diverse physiological consequences. J. Bacteriol., 190: 3434-3443.
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  50. Roy, S., R. Saraswathi, D. Chatterji and M. Vijayan, 2008. Structural studies on the second Mycobacterium smegmatis Dps: Invariant and variable features of structure, assembly and function. J. Mol. Biol., 375: 948-959.
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  51. Naresh, K., B.K. Bharati, N. Jayaraman and D. Chatterji, 2008. Synthesis and mycobacterial growth inhibition activities of bivalent and monovalent arabinofuranoside containing alkyl glycosides. Organic Biomolecular Chem., 6: 2388-2393.
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  52. Mukherjee, R. and D. Chatterji, 2008. Stationary phase induced alterations in mycobacterial RNA polymerase assembly: A cue to its phenotypic resistance towards rifampicin. Biochem. Biophys. Res. Commun., 369: 899-904.
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  53. Mukherjee, R. and D. Chatterji, 2008. Proteomics and mass spectrometric studies reveal planktonic growth of Mycobacterium smegmatis in biofilm cultures in the absence of rpoZ. J. Chromatography B, 861: 196-202.
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  54. Chowdhury, R.P., M.S. Vijayabaskar, S. Vishveshwara and D. Chatterji, 2008. Molecular mechanism of in vitro oligomerization of Dps from Mycobacterium smegmatis: Mutations of the residues identified by "interface cluster" analysis. Biochemistry, 47: 11110-11117.
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  55. Chatterji, D. and P. Rajdev, 2008. Macromolecular recognition at the air-water interface: Application of Langmuir-Blodgett. Curr. Sci., 95: 1226-1236.
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  56. Roy, S., R. Saraswathi, S. Gupta, K. Sekar, D. Chatterji and M. Vijayan, 2007. Role of N and C-terminal tails in DNA binding and assembly in Dps: Structural studies of Mycobacterium smegmatis Dps deletion mutants. J. Mol. Biol., 370: 752-767.
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  57. Rajdev, P. and D. Chatterji, 2007. Thermodynamic and spectroscopic studies on the nickel arachidate-RNA polymerase langmuir-blodgett monolayer. Langmuir, 23: 2037-2041.
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  58. Jain, V., R. Saleem-Batcha and D. Chatterji, 2007. Synthesis and hydrolysis of pppGpp in mycobacteria: A ligand mediated conformational switch in Rel. Biophys. Chem., 127: 41-50.
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  59. Chowdhury, R.P., S. Gupta and D. Chatterji, 2007. Identification and characterization of the dps promoter of Mycobacterium smegmatis: Promoter recognition by stress-specific extracytoplasmic function sigma factors σH and σF. J. Bacteriol., 189: 8973-8981.
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  60. Chowdhury, R.P. and D. Chatterji, 2007. Estimation of Forster's distance between two ends of Dps protein from mycobacteria: Distance heterogeneity as a function of oligomerization and DNA binding. Biophys. Chem., 128: 19-29.
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  61. Sharma, U.K. and D. Chatterji, 2006. Both regions 4.1 and 4.2 of E. coli sigma(70) are together required for binding to bacteriophage T4 AsiA in vivo. Gene, 376: 133-143.
    CrossRef  |  PubMed  |  

  62. Nagapriya, K.S., A.K. Raychaudhuri and D. Chatterji, 2006. Direct observation of large temperature fluctuations during DNA thermal denaturation. Phys. Rev. Lett., Vol. 96. 10.1103/PhysRevLett.96.038102.
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  63. Mathew, R., R. Mukherjee, R. Balachandar and D. Chatterji, 2006. Deletion of the rpoZ gene, encoding the ω subunit of RNA polymerase, results in pleiotropic surface-related phenotypes in Mycobacterium smegmatis. Microbiology, 152: 1741-1750.
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  64. Mathew, R. and D. Chatterji, 2006. The evolving story of the omega subunit of bacterial RNA polymerase. Trends Microbiol., 14: 450-455.
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  65. Jain, V., R. Saleem‐Batcha, A. China and D. Chatterji, 2006. Molecular dissection of the mycobacterial stringent response protein Rel. Protein Sci., 15: 1449-1464.
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  66. Jain, V., M. Kumar and D. Chatterji, 2006. ppGpp: Stringent response and survival. J. Microbiol. Seoul, 44: 1-10.
    PubMed  |  Direct Link  |  

  67. Chatterji, D., Y. Ogawa, T. Shimada and A. Ishihama, 2006. The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli. FEMS Microbiol. Lett., 267: 51-55.
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  68. Mukherjee, R., M. Gomez, N. Jayaraman, I. Smith and D. Chatterji, 2005. Hyperglycosylation of glycopeptidolipid of Mycobacterium smegmatis under nutrient starvation: Structural studies. Microbiology, 151: 2385-2392.
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  69. Mukherjee, R. and D. Chatterji, 2005. Evaluation of the role of sigma B in Mycobacterium smegmatis. Biochem. Biophys. Res. Commun., 338: 964-972.
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  70. Mathew, R., M. Ramakanth and D. Chatterji, 2005. Deletion of the Gene rpoZ, encoding the ω subunit of RNA polymerase, in Mycobacterium smegmatis results in fragmentation of the β' subunit in the enzyme assembly. J. Bacteriol., 187: 6565-6570.
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  71. Jain, V., S. Sujatha, A.K. Ojha and D. Chatterji, 2005. Identification and characterization of rel promoter element of Mycobacterium tuberculosis. Gene, 351: 149-157.
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  72. Gupta, S. and D. Chatterji, 2005. Stress responses in mycobacteria. IUBMB Life, 57: 149-159.
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  73. Ghosh, D., M. Ramakanth, A. Bhaumik, N. Faure, F. Rondelez and D. Chatterji, 2005. Transcription of T7 DNA immobilised on latex beads and Langmuir-Blodgett film. J. Biochem. Biophys. Methods, 62: 51-62.
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  74. Brar, L.K., P. Rajdev, A.K. Raychaudhuri and D. Chatterji, 2005. Langmuir monolayer as a tool toward visualization of a specific DNA-protein complex. Langmuir, 21: 10671-10675.
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  75. Roy, S., S. Gupta, S. Das, K. Sekar, D. Chatterji and M. Vijayan, 2004. X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules. J. Mol. Biol., 339: 1103-1113.
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  76. Mathew, R., A.K. Ojha, A.A. Karande and D. Chatterji, 2004. Deletion of the rel gene in Mycobacterium smegmatis reduces its stationary phase survival without altering the cell-surface associated properties. Curr. Sci., 86: 149-153.
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  77. Bhaumik, A., M. Ramakanth, L.K. Brar, A.K. Raychaudhuri, F. Rondelez and D. Chatterji, 2004. Formation of a DNA layer on Langmuir-blodgett films and its enzymatic digestion. Langmuir, 20: 5891-5896.
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  78. Roy, S., S. Gupta, S. Das, K. Sekar, D. Chatterji and M. Vijayan, 2003. Crystallization and preliminary X-ray diffraction analysis of Mycobacterium smegmatis Dps. Acta Crystallographica Sect. D: Biol. Crystallography, 59: 2254-2256.
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  79. Gupta, S. and D. Chatterji, 2003. Bimodal protection of DNA by Mycobacterium smegmatis DNA-binding protein from stationary phase cells. J. Biol. Chem., 278: 5235-5241.
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  80. Ghosh, P., C. Ramakrishnan and D. Chatterji, 2003. Inter-subunit recognition and manifestation of segmental mobility in Escherichia coli RNA polymerase: A case study with ω-β′ interaction. Biophys. Chem., 103: 223-237.
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  81. Ghosh, P. and D. Chatterji, 2003. Protein folding activity and the central dogma of molecular biology. Curr. Sci., 85: 755-761.
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  82. Ghosh, D., N. Faure, S. Kundu, F. Rondelez and D. Chatterji, 2003. Hybridization and immobilization of long ds-DNAs on polystyrene microspheres. Langmuir, 19: 5830-5837.
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  83. Ranganathan, S., K.M. Muraleedharan, P. Bharadwaj, D. Chatterji and I. Karle, 2002. The design and synthesis of redox core-alpha amino acid composites based on thiol-disulfide exchange mechanism and a comparative study of their zinc abstraction potential from [CCXX] boxes in proteins. Tetrahedron, 58: 2861-2874.
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  84. Ojha, A.K., S. Varma and D. Chatterji, 2002. Synthesis of an unusual polar glycopeptidolipid in glucose-limited culture of Mycobacterium smegmatis. Microbiology, 148: 3039-3048.
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  85. Gupta, S., S.B. Pandit, N. Srinivasan and D. Chatterji, 2002. Proteomics analysis of carbon-starved Mycobacterium smegmatis: Induction of Dps-like protein. Protein Eng., 15: 503-511.
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  86. Sujatha, S., A. Ishihama and D. Chatterji, 2001. Functional complementation between mutations at two distant positions in Escherichia coli RNA polymerase as revealed by second-site suppression. Mol. General Genet., 264: 531-538.
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  87. Kannan, N., P. Chander, P. Ghosh, S. Vishveshwara and D. Chatterji, 2001. Stabilizing interactions in the dimer interface of α‐subunit in Escherichia coli RNA polymerase: A graph spectral and point mutation study. Protein Sci., 10: 46-54.
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  88. Ghosh, P., A. Ishihama and D. Chatterji, 2001. Escherichia coli RNA polymerase subunit ω and its N‐terminal domain bind full‐length β' to facilitate incorporation into the α2β subassembly. FEBS J., 268: 4621-4627.
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  89. Chatterji, D. and A.K. Ojha, 2001. Revisiting the stringent response, ppGpp and starvation signaling. Curr. Opin. Microbiol., 4: 160-165.
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  90. Balakrishnan, V., S. Varma and D. Chatterji, 2001. Piperine augments transcription inhibitory activity of rifampicin by severalfold in Mycobacterium smegmatis. Curr. Sci., 80: 1302-1305.
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  91. Sujatha, S. and D. Chatterji, 2000. Understanding protein-protein interactions by genetic suppression. J. Genet., 79: 125-129.
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  92. Ojha, A.K., T.K. Mukherjee and D. Chatterji, 2000. High intracellular level of guanosine tetraphosphate in Mycobacterium smegmatis changes the morphology of the bacterium. Infect. Immunity, 68: 4084-4091.
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  93. Chatterji, D. and P. Chander, 2000. Three dimensional structures at the heart of the central dogma of molecular biology: An end of millennium gift-pack from crystallographers. Curr. Sci., 78: 15-18.
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  94. Sujatha, S. and D. Chatterji, 1999. Detection of putative Zn (II) binding sites within Escherichia coli RNA polymerase: Inconsistency between sequence‐based prediction and 65Zn blotting. FEBS Lett., 454: 169-171.
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  95. Patturajan, M., M. Sevugan and D. Chatterji, 1999. DNA‐dependent RNA polymerase ii from candida species is a multiple zinc‐containing Metalloenzyme. IUBMB Life, 48: 163-168.
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  96. Mukherjee, K., H. Nagai, N. Shimamoto and D. Chatterji, 1999. GroEL is involved in activation of Escherichia coli RNA polymerase devoid of the ω subunit in vivo. FEBS J., 266: 228-235.
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  97. Mukherjee, K. and D. Chatterji, 1999. RNA polymerase and its accessory factors in Escherichia coli. Proc. Ind. Nat. Acad. Sci., 65: 109-130.

  98. Mukherjee, K. and D. Chatterji, 1999. Alteration in template recognition by Escherichia coli RNA polymerase lacking the ω subunit: A mechanistic analysis through gel retardation and foot-printing studies. J. Biosci., 24: 453-459.
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  99. Chatterji, D., 1999. Search for an individual in the midst of a crowd: Tracking a single molecule. Curr. Sci., 76: 1295-1296.
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